MmuEX6083435 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:118018706-118023983:-
Coord C1 exon
chr12:118023810-118023983
Coord A exon
chr12:118020188-118020392
Coord C2 exon
chr12:118018706-118018871
Length
205 bp
Sequences
Splice sites
3' ss Seq
TGATTTTTTTTCTCTCCCAGACA
3' ss Score
10.29
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
CTTTCTGATTATCAAGCCGACTTCAGTAGATGGTGGCATAAGGAAATGAAAGCAGTGAAGTTTCCATCCCAGGGAACCATCTTTGATTATTATCTGGACCACAAAACTAAAAAATTTTTGCCTTGGACTGACAAGGTTCCCCAGTTCTCCATGGATGCTGATGCGCCCCTGAAG
Seq A exon
ACAGTTCTGGTACACACACCAGAGACAACTCGTCTGAGGTATTTTACTGAGTTGCTACTTTGCAAAGGCAAACCGATAATGCTGGTTGGAAATGCAGGAGTGGGGAAAACGGTCTTTTTGAGCAACACCCTGGCAAGTCTCTCTGAGAACTACATAGTATCCTGTGTGCCTTTCAACTACTACACAACATCAGCAGCCCTGCAGA
Seq C2 exon
GAATTCTTGAAAAACCTCTAGAGAAAAAAGCTGGTCGTAACTATGGTCCAAAAGGAAATAAAAAACTGGTTTATTTCATTGATGATCTGAACATGCCTGAAGTGGATTTGTATGGCACTATCCAGCCTCATGCGCTGCTTCGGCAGCATATTGACTATGGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'56-56,'56-55,57-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(3.3=15.5)
A:
PF127752=AAA_7=FE(25.1=100)
C2:
PF127752=AAA_7=FE(20.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACTTCAGTAGATGGTGGC
R:
CAGCGCATGAGGCTGGATAG
Band lengths:
295-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types