BtaEX0011579 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54355435-54358467:+
Coord C1 exon
chr19:54355435-54355591
Coord A exon
chr19:54356604-54356708
Coord C2 exon
chr19:54358310-54358467
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTCCCCGCCACCTTTCCTAGTCC
3' ss Score
6.77
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
ATGCTACATAACCTTGACCCAGTCCCTCCATCTGATCATGGGCGGAGCTCCTGCTGGCCCCGCCGGGACTGGCAAGACCGAGACGACCAAGGACCTGGGCAGAGCCCTGGGCACCATGGTGTACGTCTTCAACTGCTCCGAGCAGATGGACTACAAG
Seq A exon
TCCTGCGGAAACATCTACAAGGGCCTGGCCCAGACCGGAGCCTGGGGCTGCTTTGACGAGTTTAATCGGATCTCTGTGGAGGTCTTGTCCGTGATTGCTGTACAG
Seq C2 exon
GTAAAATGTGTCCAAGATGCAATTCGGGCCAAGAAGAAAACGTTTAATTTCCTGGGAGAGATGATAAGCCTCATCCCCACCGTCGGCATCTTCATCACCATGAACCCGGGGTATGCCGGGCGCACGGAGCTGCCAGAGAACTTAAAGGCCTTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
PF127742=AAA_6=FE(14.7=100)
C2:
PF127742=AAA_6=FE(22.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGACCCAGTCCCTCCATCT
R:
CCCGGGTTCATGGTGATGAAG
Band lengths:
255-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development