MmuEX6091616 @ mm9
Exon Skipping
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117944139-117948383:-
Coord C1 exon
chr11:117948227-117948383
Coord A exon
chr11:117947382-117947486
Coord C2 exon
chr11:117944139-117944296
Length
105 bp
Sequences
Splice sites
3' ss Seq
ATCTGACTTTCCCTTTGTAGTCC
3' ss Score
9.13
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTGCTACATCACGCTCACGCAGTCCCTCCACCTGATCATGGGCGGAGCCCCTGCAGGCCCTGCTGGCACGGGCAAGACGGAGACAACCAAGGACCTGGGCAGAGCCCTGGGCACCATGGTGTATGTCTTCAACTGCTCAGAGCAGATGGACTACAAG
Seq A exon
TCCTGTGGAAACATCTACAAGGGCCTGGCACAGACGGGAGCCTGGGGTTGCTTTGATGAGTTTAACCGGATCTCGGTGGAGGTCTTGTCTGTGATTGCTGTACAG
Seq C2 exon
GTAAAGTGTGTCCAAGATGCAATTCGGGCCAAGAAAAAGAAGTTTAACTTCCTGGGAGAGATAATAAGCCTTGTCCCCACCGTGGGCATCTTTATCACCATGAATCCTGGCTACGCAGGGCGCACGGAGCTGCCGGAGAACTTGAAGGCCCTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-'42-41,'42-40,43-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
PF127742=AAA_6=FE(14.7=100)
C2:
PF127742=AAA_6=FE(22.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACATCACGCTCACGCAGTC
R:
GGTGATAAAGATGCCCACGGT
Band lengths:
253-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: