HsaEX6025143 @ hg38
Exon Skipping
Gene
ENSG00000187775 | DNAH17
Description
dynein axonemal heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr17:78495875-78500461:-
Coord C1 exon
chr17:78500305-78500461
Coord A exon
chr17:78499008-78499112
Coord C2 exon
chr17:78495875-78496032
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTCCATCTCGCCCTTTCCAGTCC
3' ss Score
8.6
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTGCTATATCACCCTGACCCAGTCCCTCCATCTCATCATGGGTGGAGCCCCTGCCGGCCCCGCTGGGACCGGCAAGACTGAGACGACCAAGGACCTGGGCAGAGCCCTGGGCACCATGGTCTACGTCTTCAACTGCTCCGAGCAGATGGACTACAAG
Seq A exon
TCCTGTGGAAATATCTACAAGGGCCTGGCCCAGACGGGAGCCTGGGGCTGCTTTGACGAGTTTAATCGCATCTCAGTGGAAGTCTTGTCTGTGATTGCCGTGCAG
Seq C2 exon
GTAAAATGTGTCCAGGATGCAATTCGGGCCAAGAAAAAAGCATTCAATTTCCTGGGAGAGATCATAGGCCTCATTCCCACCGTCGGTATCTTCATCACCATGAACCCTGGGTACGCCGGACGCGCGGAGCTGCCTGAGAACCTAAAAGCCTTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-'50-60,'50-59,52-60
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.099 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
PF127742=AAA_6=FE(14.7=100)
C2:
PF127742=AAA_6=FE(22.5=100)
Main Skipping Isoform:
ENST00000389840fB13971
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCACCCTGACCCAGTCCC
R:
TGAAGATACCGACGGTGGGAA
Band lengths:
246-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains