GgaEX1020168 @ galGal4
Exon Skipping
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10081262-10082081:+
Coord C1 exon
chr18:10081262-10081418
Coord A exon
chr18:10081712-10081816
Coord C2 exon
chr18:10081924-10082081
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCCTTTGCTTTGCTCTCCAGTCC
3' ss Score
9.14
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTGCTACATCACCCTGACGCAGTCCCTGCATCTCTTCATGGGAGGGGCCCCTGCTGGCCCTGCAGGCACCGGGAAAACAGAGACCACCAAGGACCTGGGCCGGGCAGTGGGCATGATGGTCTACGTCTTCAACTGCTCCGAGCAGATGGACTATAAG
Seq A exon
TCCTGCGGCAATATCTATAAGGGGCTCGCTCAGACCGGAGCCTGGGGCTGCTTCGACGAGTTCAATCGCATCGCGGTGGAGGTGCTGTCAGTGATTGCAGTGCAG
Seq C2 exon
GTGAAATGTGTTCAGGATGCAATTCGTGCTAAAAAGAAAACGTTCAATTTTCTCGGAGAGACGATATCGCTGGTGCCATCGGTCGGGCTGTTCATCACGATGAACCCTGGCTATGCAGGACGGACAGAACTGCCCGAAAACTTAAAGGCTCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106-'39-40,'39-39,40-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
PF127742=AAA_6=FE(14.7=100)
C2:
PF127742=AAA_6=FE(22.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTGCATCTCTTCATGGGA
R:
CTGCATAGCCAGGGTTCATCG
Band lengths:
253-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]