BtaEX0011611 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59509604-59519539:+
Coord C1 exon
chr20:59509604-59509794
Coord A exon
chr20:59515559-59515680
Coord C2 exon
chr20:59519390-59519539
Length
122 bp
Sequences
Splice sites
3' ss Seq
TAATATATTTAACTTGAAAGGTG
3' ss Score
4.41
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTCTGTCAAGAGCCCAATTACAAGCAAGAGGATCGCTAATATCATTGAGCACATGACCTATGAGGTTTTTAAGTACACAGCCCGGGGGTTGTATGAGGAGCACAAATTCCTGTTCACGCTGCTGCTTACCCTGAAGATTGACATCCAGAGGAACCGAGTCAAGCATGAAGAGTTTCTCACCCTTATTAAAG
Seq A exon
GTGGTGCCTCCTTGGACTTGAAAGCCTGTCCTCCTAAACCATCTAAATGGATCCTGGACATGACCTGGCTAAATTTGGTGGAACTCAGCAAACTTAGACAGTTTTCTGATGTCCTTGATCAG
Seq C2 exon
ATATCAAGAAATGAGAAAATGTGGAAAATTTGGTTTGATAAGGAAAACCCTGAGGAGGAACCCCTTCCAAATGCCTATGATAAATCTCTTGACTGCTTTCGACGTCTTCTCCTTATTAGATCCTGGTGTCCTGACAGAACCATTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0302810=Dynein_heavy=PU(4.9=82.9)
C2:
PF0302810=Dynein_heavy=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGTTGTATGAGGAGCACA
R:
GGGCAATGGTTCTGTCAGGAC
Band lengths:
256-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development