GgaEX6020559 @ galGal3
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78601834-78604329:+
Coord C1 exon
chr2:78601834-78602024
Coord A exon
chr2:78603120-78603241
Coord C2 exon
chr2:78604180-78604329
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTTTTACTTTCAGGTG
3' ss Score
13.45
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
GTCTACCAAAAGCCCTATAACTAGCAAGAGGATTACTAATATTATCGAACATATGACATATGAAGTGTTCAAATATGCAGCCCGAGGACTCTATGAGGAGCACAAATTTCTTTTCACATTATTACTTACTTTGAAGATCGATATACAAAGAAACAGAGTGAAGCATGAAGAATTTCTGACACTTATTAAAG
Seq A exon
GTGGTGCTTCCCTAGACCTTAAAACTTGTCCTCCCAAGCCAGCTAAATGGATCCTGGATATGACTTGGCTGAATTTGGTGGAGCTTAGTAAACTTAGCCAATTTTCACATATTCTTGACCAA
Seq C2 exon
ATTTCTAGAGCAGAGAAAGAGTGGAAGACCTGGTTTGATAAAGAGAATCCTGAAGAAGAACCAGTTCCTTGTGGCTATGGTCAATCCCTGGATTGCTTCAGACGTCTTCTTCTTATCAGATCTTTGTGCCCTGACAGGACCATTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'73-77,'73-76,74-77=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0302810=Dynein_heavy=PU(4.9=82.9)
C2:
PF0302810=Dynein_heavy=FE(7.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGAGGACTCTATGAGGAGC
R:
GTCCTGTCAGGGCACAAAGAT
Band lengths:
251-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]