MmuEX6053029 @ mm9
Exon Skipping
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28351320-28368003:+
Coord C1 exon
chr15:28351320-28351510
Coord A exon
chr15:28365925-28366046
Coord C2 exon
chr15:28367854-28368003
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTTCATATATTTTTTTATAGGTG
3' ss Score
9.28
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTCTGTCAAGAGCCCAATTACAAGCAAGAGGATTGCTAATATCATTGAGCACATGACCTATGAGGTATTCAAGTATGCTGCCCGAGGCCTATATGAAGAGCATAAATTCCTGTTCACTTTGTTGCTCACCCTAAAGATTGACATCCAGAGGAACCTAGTCAAACATGAGGAGTTTCTCACTCTCATTAAAG
Seq A exon
GTGGTGCCTCATTGGATCTAAAAGCCTGTCCTCCTAAGCCATCAAAATGGATCCTAGACATGACTTGGCTGAATTTGGTGGAACTTAGCAAACTTAAACAGTTTTCAGACATCCTTGATCAG
Seq C2 exon
ATATCAAGGAATGAAAAGATGTGGAGAGTTTGGTTTGATAAAGAAAACCCAGAAGAGGAGCCGCTTCCAAATGCCTACGATAAATCTCTCGACTGCTTCAGACGCCTCCTTCTGATTAGGTCCTGGTGTCCCGACAGAACCATTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'67-68,'67-67,68-68=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0302810=Dynein_heavy=PU(4.9=82.9)
C2:
PF0302810=Dynein_heavy=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCAAGTATGCTGCCCGAGG
R:
CGGGACACCAGGACCTAATCA
Band lengths:
258-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: