MmuEX6053029 @ mm10
Exon Skipping
Gene
ENSMUSG00000022262 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28421565-28438248:+
Coord C1 exon
chr15:28421565-28421755
Coord A exon
chr15:28436170-28436291
Coord C2 exon
chr15:28438099-28438248
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTTCATATATTTTTTTATAGGTG
3' ss Score
9.28
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTCTGTCAAGAGCCCAATTACAAGCAAGAGGATTGCTAATATCATTGAGCACATGACCTATGAGGTATTCAAGTATGCTGCCCGAGGCCTATATGAAGAGCATAAATTCCTGTTCACTTTGTTGCTCACCCTAAAGATTGACATCCAGAGGAACCTAGTCAAACATGAGGAGTTTCTCACTCTCATTAAAG
Seq A exon
GTGGTGCCTCATTGGATCTAAAAGCCTGTCCTCCTAAGCCATCAAAATGGATCCTAGACATGACTTGGCTGAATTTGGTGGAACTTAGCAAACTTAAACAGTTTTCAGACATCCTTGATCAG
Seq C2 exon
ATATCAAGGAATGAAAAGATGTGGAGAGTTTGGTTTGATAAAGAAAACCCAGAAGAGGAGCCGCTTCCAAATGCCTACGATAAATCTCTCGACTGCTTCAGACGCCTCCTTCTGATTAGGTCCTGGTGTCCCGACAGAACCATTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'74-73,'74-71,75-73=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0302810=Dynein_heavy=PU(4.9=82.9)
C2:
PF0302810=Dynein_heavy=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCAAGTATGCTGCCCGAGG
R:
CGGGACACCAGGACCTAATCA
Band lengths:
258-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types