DreEX6039486 @ danRer10
Exon Skipping
Gene
ENSDARG00000087373 | dnah5
Description
dynein, axonemal, heavy chain 5 [Source:ZFIN;Acc:ZDB-GENE-110411-177]
Coordinates
chr16:9336943-9346935:+
Coord C1 exon
chr16:9336943-9337133
Coord A exon
chr16:9342800-9342921
Coord C2 exon
chr16:9346786-9346935
Length
122 bp
Sequences
Splice sites
3' ss Seq
GCTCCTTTGATGTCTTCCAGGAG
3' ss Score
9.26
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTCCTCAAAGAGCCCAATTACAAGCAAGCGGATCGCCAACATCATTGAGTACATGACCTTTGAGGTGCACAAGTACGCAGCTCGGGGCTTGTATGAAGAGCACAAATTCCTGTTCACCCTGCTGCTCACTCTCAAGATCGACATGCAGAGCAACAGGGTCAAACACGAAGAGTTCCTGACCCTCATTAAAG
Seq A exon
GAGGTGCTTCCCTAGACCTGAAGGCCTGTCCACCCAAAGCTGCAAAGTGGATCCTGGACATAACGTGGCTTAACTTGGTGGAGCTGAGCAAACTGTGGCAGTTTTCTGACATTCTGGACCAG
Seq C2 exon
ATTGGCCGTCATGAGAAGCAATGGAGGAGCTGGTTTGATCGAGAGGCTCCAGAGGAAGAACCAATCCCAAATGCATATGACCAGGCTTTGGACTGTTTCAGGCGGCTGCTCCTTATTAGATCTTGGTGTCCAGATAGAACAATTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087373-'39-40,'39-38,40-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0302810=Dynein_heavy=PU(4.9=82.9)
C2:
PF0302810=Dynein_heavy=FE(49.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGGTGCACAAGTACGCAG
R:
TCTAATAAGGAGCAGCCGCCT
Band lengths:
252-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]