BtaEX0011620 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84789584-84801587:-
Coord C1 exon
chr2:84801426-84801587
Coord A exon
chr2:84791865-84792050
Coord C2 exon
chr2:84789584-84789721
Length
186 bp
Sequences
Splice sites
3' ss Seq
CAACTCGAGCTCTCCTATAGGAA
3' ss Score
2.92
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GAGGAATTCAAGAAACTACTATATGGCCTCTGTTTCTTTCATGCTTTGGTACAAGAGAGACGGAAGTTTGGCCCCCTGGGGTGGAATATTCCTTATGAGTTCAACGAGACTGATCTCAGAATCAGCGTACAGCAGCTGCACATGTTCCTGAATCAGTATGAG
Seq A exon
GAACTGCCCTACGACGCCCTACGCTACATGACCGGCGAGTGCAATTACGGCGGCCGCGTGACTGACGACTGGGACCGGCGCACTCTGCGCAGCATCCTAAACAAATTCTTCAACCCGGAATTAGTTCAGAATCCGCACTATAAATTCGACTCCAGTGGCATCTATTTTGCGCCTCCTTCTGGGGAT
Seq C2 exon
CACAACAGCTACATTGAATACACAAAGACACTGCCTCTGACCCCAGCTCCAGAAGTCTTTGGGATGAATGCCAATGCTGATATCACTAAAGATCAGTCAGAAACTCAACTGCTGTTCGACAATATTCTTCTCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784-'61-69,'61-68,63-69
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.152
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.5=100)
A:
PF0302810=Dynein_heavy=FE(8.6=100)
C2:
PF0302810=Dynein_heavy=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTCTGTTTCTTTCATGCT
R:
TCGAACAGCAGTTGAGTTTCTGA
Band lengths:
258-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development