HsaEX6017595 @ hg38
Exon Skipping
Gene
ENSG00000118997 | DNAH7
Description
dynein axonemal heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr2:195775846-195787171:-
Coord C1 exon
chr2:195787010-195787171
Coord A exon
chr2:195777800-195777985
Coord C2 exon
chr2:195775846-195775983
Length
186 bp
Sequences
Splice sites
3' ss Seq
ACTGACACGCACTATTTTAGGAA
3' ss Score
6.34
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GAGGAATTCAAGAAATTGCTTTATGGCCTGTGTTTCTTTCATGCTTTGGTACAAGAAAGACGGAAATTTGGACCCCTAGGGTGGAATATTCCTTATGAGTTCAATGAGACAGATCTGAGAATCAGCGTACAGCAGCTCCACATGTTCCTGAACCAGTATGAG
Seq A exon
GAACTGCCGTATGAGGCTCTGCGGTACATGACTGGCGAATGCAATTACGGAGGCAGAGTGACCGATGACTGGGACCGGCGCACGCTGCGCAGCATTCTAAACAAATTCTTCAATCCCGAATTAGTTGAAAATTCAGACTATAAGTTCGACTCAAGTGGCATCTATTTTGTTCCTCCTTCTGGTGAT
Seq C2 exon
CACAAAAGCTACATCGAATACACAAAGACTCTGCCACTGACCCCAGCACCAGAAATCTTTGGGATGAATGCCAATGCAGATATCACTAAGGATCAGTCAGAAACTCAGCTGCTATTTGATAACATTCTTCTTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-'99-104,'99-103,100-104
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.060
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.5=100)
A:
PF0302810=Dynein_heavy=FE(12.0=100)
C2:
PF0302810=Dynein_heavy=FE(6.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTGTGTTTCTTTCATGCT
R:
AGCAGCTGAGTTTCTGACTGA
Band lengths:
252-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains