MmuEX0015034 @ mm9
Exon Skipping
Gene
ENSMUSG00000041144 | Dnahc7c
Description
dynein, axonemal, heavy chain 7B [Source:MGI Symbol;Acc:MGI:2684953]
Coordinates
chr1:46394275-46400716:+
Coord C1 exon
chr1:46394275-46394436
Coord A exon
chr1:46396963-46397148
Coord C2 exon
chr1:46400579-46400716
Length
186 bp
Sequences
Splice sites
3' ss Seq
ACTGTAGTTCTCAATTTTAGGAA
3' ss Score
8.85
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GAGGAATTCAAGAAATTGCTTTATGGCCTCTGTTTCTTTCATGCTTTGGTACAAGAGAGACGAAAATTCGGACCCCTAGGGTGGAATATTCCTTACGAATTCAATGAGACAGATCTAAGAATCAGTGTGCAGCAACTCCACATGTTCCTGGACCAGTATGAG
Seq A exon
GAACTTCCTTACGATGCTCTCCGCTACATGACTGGGGAATGTAATTATGGAGGCCGGGTGACAGACGACTGGGATCGGCGCACACTGCGCAGCATTCTCAACAAATTCTTCTGCACAGAATTAGTTGAAAATCCACAATACAAATTTGACTCTAGTGGCATCTATTTCGTCCCTCCCTCTGGTGAT
Seq C2 exon
CACAAAAGCTACATCAACTACACAAAGACTTTGCCACTGATCCCAGCACCAGAAGTCTTTGGGATGAATGCCAATGCCGACATCACTAAGGACCAGTCGGAGACGCAGCTGCTGTTTGATAACATTCTCCTTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041144-'64-62,'64-61,65-62
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(12.2=100)
A:
PF0302810=Dynein_heavy=FE(14.1=100)
C2:
PF0302810=Dynein_heavy=FE(10.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTCTGTTTCTTTCATGCT
R:
CGTCTCCGACTGGTCCTTAGT
Band lengths:
244-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: