RnoEX6039704 @ rn6
Exon Skipping
Gene
ENSRNOG00000060984 | Dnah7
Description
dynein, axonemal, heavy chain 7 [Source:RGD Symbol;Acc:621798]
Coordinates
chr9:60108363-60112738:-
Coord C1 exon
chr9:60112577-60112738
Coord A exon
chr9:60109694-60109879
Coord C2 exon
chr9:60108363-60108500
Length
186 bp
Sequences
Splice sites
3' ss Seq
ACGGCGGGTCTCCATTTTAGGAA
3' ss Score
9.53
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GAGGAATTCAAGAAATTGCTTTATGGCCTCTGTTTCTTTCATGCTTTGGTACAAGAGAGACGAAAATTCGGACCCCTGGGGTGGAATATTCCTTATGAATTCAATGAGACAGATCTAAGAATCAGTGTGCAGCAACTCCACATGTTTCTGAACCAGTATGAG
Seq A exon
GAACTTCCGTATGATGCTCTCCGCTACATGACTGGGGAATGTAATTACGGAGGCCGGGTGACGGACGACTGGGACCGGCGTACACTGCGCAGCATTCTCAACAAATTCTTCTGCACAGAATTAGTCGAAAACCCACAATACAAATTTGACTCAAGTGGCATCTATTTTGTCCCTCCTTCTGGTGAT
Seq C2 exon
CACAAAAGCTACATTGAATACACAAAGACTCTTCCACTGATCCCAGACCCAGAAATCTTTGGGATGAACGCCAATGCCGACATCACTAAGGACCAGTCCGAGACGCAGCTGCTGTTTGATAACATTCTCCTCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060984-'63-63,'63-62,64-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.5=100)
A:
PF0302810=Dynein_heavy=FE(8.6=100)
C2:
PF0302810=Dynein_heavy=FE(6.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTTTATGGCCTCTGTTTCT
R:
TGGTCCTTAGTGATGTCGGCA
Band lengths:
242-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]