DreEX6036433 @ danRer10
Exon Skipping
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25151646-25155365:-
Coord C1 exon
chr9:25155204-25155365
Coord A exon
chr9:25154181-25154366
Coord C2 exon
chr9:25151646-25151783
Length
186 bp
Sequences
Splice sites
3' ss Seq
GGTTGTGTGTGTCCTTGCAGGAG
3' ss Score
10.12
5' ss Seq
GATGTAAGG
5' ss Score
6.35
Exon sequences
Seq C1 exon
GCTGTCTTTAAGAAGCTGCTGTTTAGCTTGTGCTTCTTTCATGCGCTGACGCAAGAGAGAAGGAAATTCGGTCCTCTTGGCTGGAACATTCCCTATGAGTTCAACGAGACAGACCTGCGGATCTCTGTCCAGCAGTTACACATGTTCTTGGACCAGTATGAG
Seq A exon
GAGATCCCCTTTGATGCCCTTCGTTATATGACAGGGGAGTGTAACTACGGAGGTCGTGTCACAGACGACTGGGATAGAAGGACCCTGCGCACTATACTTTCCATCTTCTACACCTCTGAGATCATTAATGATGCTGATTACAAGTTTGACCCCAGTGGCTTGTATTACTCACCACCTGAAGGAGAT
Seq C2 exon
TACAACAGCTACATTGAGTACACCAAAACGCTTCCTCTAAATCCCTCACCTGAAATCTTTGGGATGAATGCCAATGCTGATATTACCAAGGACCAAGTGGAAACACAGCTGTTGTTTGATAGCATCCTTCTCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165-'60-60,'60-59,61-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.1=100)
A:
PF0302810=Dynein_heavy=FE(10.5=100)
C2:
PF0302810=Dynein_heavy=FE(7.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCTTCTTTCATGCGCTGA
R:
GCTGTGTTTCCACTTGGTCCT
Band lengths:
243-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]