GgaEX0011161 @ galGal3
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
NA
Coordinates
chr7:10671040-10673896:-
Coord C1 exon
chr7:10673735-10673896
Coord A exon
chr7:10671419-10671604
Coord C2 exon
chr7:10671040-10671177
Length
186 bp
Sequences
Splice sites
3' ss Seq
ATGGTTCATTTTTTGTCTAGGAC
3' ss Score
7.9
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GCTGAGTTCAAGACATTGCTGTATGGCCTCTGCTTCTTCCATGCACTGGTGCAAGAAAGGCGCAATTTTGGGCCGCTGGGTTGGAACATTCCGTATGAGTTCAACGAGACAGATCTGCGCATCAGTGTGCAGCAGCTGCACATCTTCCTCAACCAGTACGAG
Seq A exon
GACGTACCATACGATGCCCTTCGCTATATGACTGGGGAATGTAACTACGGTGGCAGAGTCACTGACGAGTGGGATCGCCGTACGCTCCGTAGCGTTCTGAACATGTTCTTTTCATCAGAAATCATAACAAACAGAGATTATAAATTTGATTCCAGTGGCCTTTACTTTGTTCCTCCTGAAGGAGAT
Seq C2 exon
CACCAAAGCTATATTGAATATACAAAGACTCTCCCGCTGAATCCTTCTCCGGAGATATTTGGAATGAATGCAAATGCCGATATTACCAAGGATCAATCGGAAACACAACTGTTATTTGACAACATTCTACTTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'52-53,'52-52,53-53
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.130
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.5=100)
A:
PF0302810=Dynein_heavy=FE(8.6=100)
C2:
PF0302810=Dynein_heavy=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGCTGTATGGCCTCTGC
R:
TGTGTTTCCGATTGATCCTTGGT
Band lengths:
257-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]