BtaEX0011908 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017922 | DOLPP1
Description
Bos taurus dolichyl pyrophosphate phosphatase 1 (DOLPP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192041]
Coordinates
chr11:99568365-99570030:+
Coord C1 exon
chr11:99568365-99568464
Coord A exon
chr11:99568692-99568790
Coord C2 exon
chr11:99569941-99570030
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGACAGGGTTGTTTTCCCAGAAT
3' ss Score
4.49
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTCCCCACACGGCAGTGGGCACCAAGTACGGGATGCCCTCCAGTCACTCCCAGTTTATGTGGTTCTTCTCCATCTATTCCTTCCTTTTTCTGTATTTAAG
Seq A exon
AATGCACCAAACGAACAACGCCAGGTTCCTGGACTTGCTGTGGAGGCACGTGCTCTCGCTGGGTCTCCTCACCGTGGCCTTTCTAGTCTCCTACAGCAG
Seq C2 exon
GCCTATCTCTGAGTTCTTCCTAATCCGAGACACGAGCCTTATTCCCAATGTCCTCTGGTTTGAATACACAGTAACCCGAGCAGAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017922_MULTIEX1-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(25.4=100)
A:
PF0156916=PAP2=FE(25.4=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAGTACGGGATGCCCTC
R:
GCTTCTGCTCGGGTTACTGTG
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development