RnoEX0029453 @ rn6
Exon Skipping
Gene
ENSRNOG00000017663 | Dolpp1
Description
dolichyldiphosphatase 1 [Source:RGD Symbol;Acc:1307447]
Coordinates
chr3:8961768-8963046:+
Coord C1 exon
chr3:8961768-8961852
Coord A exon
chr3:8962190-8962288
Coord C2 exon
chr3:8962918-8963046
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGATGCGCCTCTTTTCCCAGAAT
3' ss Score
8.19
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
ATTTCATTCCTCGGGGGACTGGCACTGAATGAGGGTGTCAACTGGCTGATCAAACACGTCATCCAGGAGCCTCGGCCCTGTGGAG
Seq A exon
AATGCACCAAACAAATAACGCCAGGTTCCTGGACTTGCTGTGGAGGCATGTGCTGTCTCTAGGGCTCCTCACCGCGGCCTTTCTAGTCTCCTATAGCAG
Seq C2 exon
GGTCTACCTGCTGTACCACACCTGGAGCCAGGTGTTTTATGGGGGTGTTGCTGGAGGCCTCATGGCCATCGCCTGGTTCGTCATCACCCAGGAGATCCTCACCCCGTTGTTCCCCAGGATAGCAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017663_MULTIEX1-2/4=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(25.9=100)
A:
PF0156916=PAP2=FE(30.6=100)
C2:
PF0156916=PAP2=PD(25.4=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGGCACTGAATGAGGGTG
R:
GGATCTCCTGGGTGATGACGA
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]