MmuEX0015502 @ mm10
Exon Skipping
Gene
ENSMUSG00000026856 | Dolpp1
Description
dolichyl pyrophosphate phosphatase 1 [Source:MGI Symbol;Acc:MGI:1914093]
Coordinates
chr2:30396153-30397557:+
Coord C1 exon
chr2:30396153-30396252
Coord A exon
chr2:30396432-30396530
Coord C2 exon
chr2:30397468-30397557
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGATGGGCCTCTTTTCCCAGAAT
3' ss Score
6.77
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GCCCACATACAGCAGTGGGCACTAAGTACGGGATGCCCTCCAGCCATTCCCAGTTCATGTGGTTCTTCTCCGTCTACTCCTTCCTCTTCCTGTATTTAAG
Seq A exon
AATGCACCAAACAAATAACGCCAGGTTCTTGGACTTGCTGTGGAGGCACGTGCTGTCTCTAGGGCTCCTCACCGCGGCCTTTCTCGTCTCCTATAGCAG
Seq C2 exon
GCCCATCTCCGAGTTTTTCCTCATCCGGGACACGAGCCTCATTCCCAATGTGCTCTGGTTTGAGTACACAGTAACCAGGGCAGAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026856_MULTIEX1-1/3=C1-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(24.4=95.7)
A:
PF0156916=PAP2=FE(25.2=100)
C2:
PF0156916=PAP2=PD(10.2=35.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAAGTACGGGATGCCCTCC
R:
GCTTCTGCCCTGGTTACTGTG
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types