GgaEX0006042 @ galGal3
Exon Skipping
Gene
ENSGALG00000004485 | DOLPP1
Description
NA
Coordinates
chr17:6033235-6044102:+
Coord C1 exon
chr17:6033235-6033403
Coord A exon
chr17:6042582-6042680
Coord C2 exon
chr17:6043974-6044102
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGGCTCTCCATCTCTTTCAGAAT
3' ss Score
9.93
5' ss Seq
TAGGTATGG
5' ss Score
7.37
Exon sequences
Seq C1 exon
GCTCGCTGCTCTCATCGCCCCCGCCCATTGGTCGCACCGCCCCTTAACTGCGCCCCAATTGGCTGTGGTGGCCCGGCCCGGTATCCGGGTAAGATGGCCGCAGTCGGAGAGTGCTCGCTCCCCGCTCCGTGGCGGCCGGTCTCCCTCACTCACGTCGAGTATCCCGCAG
Seq A exon
AATGCACCAAACAAACAATGCGAGGTTTCTGGATTTACTATGGCGACATGTGCTGTCCATCTGCCTCGTCACAGTGGCTTTGCTAGTCTCATATAGTAG
Seq C2 exon
GGTTTATTTGCTTTACCACACCTGGAGCCAAGTCTTATATGGAGGTGTGGCAGGAAGCGTTATGGCCATAGCCTGGTTTGCCTTCACACAAGAGATACTAACTCCTCTCTTCCCAAGGATAGCTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004485_MULTIEX1-5/6=C1-6
Average complexity
C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0156916=PAP2=FE(25.4=100)
C2:
PF0156916=PAP2=PD(25.4=75.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTATCCGGGTAAGATGGCCG
R:
GTGTGAAGGCAAACCAGGCTA
Band lengths:
179-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]