HsaEX6063397 @ hg38
Exon Skipping
Gene
ENSG00000167130 | DOLPP1
Description
dolichyldiphosphatase 1 [Source:HGNC Symbol;Acc:HGNC:29565]
Coordinates
chr9:129084668-129090435:+
Coord C1 exon
chr9:129084668-129084768
Coord A exon
chr9:129085518-129085616
Coord C2 exon
chr9:129088971-129090435
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGGTGGGCCTGTTTTCGCAGAAT
3' ss Score
6.55
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GTGATCTCTCTGGCCACCTCCTTGCCTACCTGAGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCTCATCATATTTAAGCGGGAGCTGCACACG
Seq A exon
AATGCACCAAACAAACAACGCCAGGTTCCTGGACTTGCTGTGGAGGCACGTGCTCTCCCTGGGACTCCTCGCTGTGGCCTTCCTAGTCTCCTACAGCAG
Seq C2 exon
GAACAGACAACGCAAGCTGGGGACGAAACTGCAGTGACCAGTGGGTGTGGCTGGGTCCAGCCTCCAGATCTGGCCCGCACGATGCCTTGCAGGATGGACAGGATGACAGACAGGGACGAAGCAGAGACCTCTACAGACCCAAGTCACCAAGTGGAGCCTTTTTTTTTCTTATTTTAATTTTAATGAACAAGGTGGACCAAAGGGCTGAACCAGCCCCTCAACCAGGACCCTGGGGGGCCTGCTGCCTGGGGGCCGTGGCCAGAGACCCTCGCTGTGCTGCTGCCAGCCCCTGGCTGGGCAGAAAGTGCCCTCGGCATGGGCACCTGGGTGTGGGGTGGAGGAGGAGGGCTCGCGCCTCTGGTCTCGGGGCCAGGAATTCCAGGTGGCGTGAGAAGTACACACTATTTATTTTTTGGTTTTGTCAGAGGCAGGCAGGATTTTGGAGCTGGAAGAATCTGCTCTCCGGTGGCTGCCCTGTGAACAGAGGGCTCCCGGTCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167130_MULTIEX1-3/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(0.8=2.9)
A:
PF0156916=PAP2=FE(25.2=100)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCATCGTCGGTTTCGTGAC
R:
TCCCTGTCTGTCATCCTGTCC
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains