HsaEX6063396 @ hg38
Exon Skipping
Gene
ENSG00000167130 | DOLPP1
Description
dolichyldiphosphatase 1 [Source:HGNC Symbol;Acc:HGNC:29565]
Coordinates
chr9:129084668-129090435:+
Coord C1 exon
chr9:129084668-129084768
Coord A exon
chr9:129086709-129086798
Coord C2 exon
chr9:129088971-129090435
Length
90 bp
Sequences
Splice sites
3' ss Seq
TCTGATGTCTGTCTCTCCAGGCC
3' ss Score
10.36
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTGATCTCTCTGGCCACCTCCTTGCCTACCTGAGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCTCATCATATTTAAGCGGGAGCTGCACACG
Seq A exon
GCCTGTCTCCGAGTTCTTCCTAATCCGAGACACAAGCCTCATTCCCAACGTACTCTGGTTTGAGTACACGGTAACCCGGGCAGAAGCCAG
Seq C2 exon
GAACAGACAACGCAAGCTGGGGACGAAACTGCAGTGACCAGTGGGTGTGGCTGGGTCCAGCCTCCAGATCTGGCCCGCACGATGCCTTGCAGGATGGACAGGATGACAGACAGGGACGAAGCAGAGACCTCTACAGACCCAAGTCACCAAGTGGAGCCTTTTTTTTTCTTATTTTAATTTTAATGAACAAGGTGGACCAAAGGGCTGAACCAGCCCCTCAACCAGGACCCTGGGGGGCCTGCTGCCTGGGGGCCGTGGCCAGAGACCCTCGCTGTGCTGCTGCCAGCCCCTGGCTGGGCAGAAAGTGCCCTCGGCATGGGCACCTGGGTGTGGGGTGGAGGAGGAGGGCTCGCGCCTCTGGTCTCGGGGCCAGGAATTCCAGGTGGCGTGAGAAGTACACACTATTTATTTTTTGGTTTTGTCAGAGGCAGGCAGGATTTTGGAGCTGGAAGAATCTGCTCTCCGGTGGCTGCCCTGTGAACAGAGGGCTCCCGGTCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167130_MULTIEX1-5/5=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(0.8=2.9)
A:
PF0156916=PAP2=PD(10.2=35.5)
C2:
NO
Main Skipping Isoform:
ENST00000372546fB14191
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCATCGTCGGTTTCGTGAC
R:
TCCCTGTCTGTCATCCTGTCC
Band lengths:
168-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains