GgaEX1020787 @ galGal4
Exon Skipping
Gene
ENSGALG00000004485 | DOLPP1
Description
dolichyldiphosphatase 1 [Source:RefSeq peptide;Acc:NP_001025860]
Coordinates
chr17:5488583-5490687:+
Coord C1 exon
chr17:5488583-5488711
Coord A exon
chr17:5489612-5489701
Coord C2 exon
chr17:5490132-5490687
Length
90 bp
Sequences
Splice sites
3' ss Seq
ACCACCTTGTCTATTTTCAGGCC
3' ss Score
10.23
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GGTTTATTTGCTTTACCACACCTGGAGCCAAGTCTTATATGGAGGTGTGGCAGGAAGCGTTATGGCCATAGCCTGGTTTGCCTTCACACAAGAGATACTAACTCCTCTCTTCCCAAGGATAGCTGCATG
Seq A exon
GCCCATTTCAGAGTTCTTTTTAATCCGAGACACCAGCCTCATTCCTAACATCCTGTGGTTTGAATATACAGTCACAAGAGCAGAAGCAAG
Seq C2 exon
AAACAGACAGCGCAAGCTGGGTACGAAGCTCCAGTGACTCAGGAGGCGTGGGGACCAGAGTGTGCGTTTTAACAGAGACAGACAAGAGCAGAGACCTGGGAGCAGCAAGGAGCCTTTAAACAGACGGACCAAAGGAACAGGCAGGGACCATACCCAAAACCTGAAAGCCTTTGCTCTGCTTTAGCAGCTAGCTGGATGCTCCCTGATGCATGTGGGACCGTGCAGGAGTAGAAACTCATTTTCAACACAGATGCACATTGCCGGTTGGAATGTACCATCATGTCTACGTCAGGGGAAGGGGGAGAAAATGCCTGGTGTCATGTTTGGGGGAGGGAAAACCAAAAATGAATCATTTCTGTGACTTTTTTCTTTTTTTTTTCTTTAGCATGAAATATACACACTATTTATTTATTTTTTTTAAATGGAGCTATTGTTTTTGGGGTGGGTGAGGCCTTGTGTGTTTTGTTTCGCTTTTCTGTTTGGGGTTTTTCATTTTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004485-'16-15,'16-14,17-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PD(25.4=75.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAAGCGTTATGGCCATA
R:
TCCCAGGTCTCTGCTCTTGTC
Band lengths:
181-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]