DreEX6082819 @ danRer10
Exon Skipping
Gene
ENSDARG00000036915 | dolpp1
Description
dolichyldiphosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-041024-11]
Coordinates
chr21:3748023-3754042:+
Coord C1 exon
chr21:3748023-3748151
Coord A exon
chr21:3748293-3748382
Coord C2 exon
chr21:3753181-3754042
Length
90 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTTTGTGTTCTCAGGCC
3' ss Score
11.05
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
AGTTTACCTCCTGTACCACACCTGGAGTCAGGTGATTTATGGGGGCGTGGCTGGGCTCGTGATGGGCGTGGTTTGGTTTTTTATCACCCAGGAGGTGCTAACGCCACTCTTTCCCAAGATAGCAGCCTG
Seq A exon
GCCGATCTCAGAGTTTTTCTTGGTGAGAGATACAAGTCTCATTCCCAACATCCTGTGGTTTGAATATACAGTAACCAGATCAGAAGCCAG
Seq C2 exon
AAACAGACAACGAAAGCTGGGAACGAAGCTTCAGTGATTTTTCTGCAAAAACAAAACAATGAAAACTGACACAAACACACACACACACAAAGCGCACACACACACACACACACACACACACTCTCAAACACACTGGAGTTTCCTCGTCTGGACTGTTCTGGTTGGTGTGAATTGCAGAACAGTGTACATGTGGACCAAAGGAGCAAATTTATATCGCAAGACGTGAGCATTTTCACACGACCCAACCGTTCGCACGACAACATGGCCTTCTCCTTCCTCCCCCGCGCTCCTAATGCATGCGGAGAGAAAAAAAAACAAAACTATTTAATGACAAATGTAATATATATTTTATTCATTAACACTCACAGGGAAGACCGCTGTGAAATGGGAGGACAGAATATTTTAGGAGGAGACAAACTTAACAGCATGGCATTACTTTTATTTAAACCACACGTTAAAGCAGCGGGAATTTAGTCTGGCTAGTGAAATCAGGAGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036915-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PD(25.6=75.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGGCGTGGTTTGGTTTT
R:
GTGCGCTTTGTGTGTGTGTG
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]