RnoEX0029455 @ rn6
Exon Skipping
Gene
ENSRNOG00000017663 | Dolpp1
Description
dolichyldiphosphatase 1 [Source:RGD Symbol;Acc:1307447]
Coordinates
chr3:8962918-8966617:+
Coord C1 exon
chr3:8962918-8963046
Coord A exon
chr3:8963386-8963475
Coord C2 exon
chr3:8965221-8966617
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTGGGTCTCTGTCTCTCCAGGCC
3' ss Score
9.97
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGTCTACCTGCTGTACCACACCTGGAGCCAGGTGTTTTATGGGGGTGTTGCTGGAGGCCTCATGGCCATCGCCTGGTTCGTCATCACCCAGGAGATCCTCACCCCGTTGTTCCCCAGGATAGCAGCCTG
Seq A exon
GCCCATCTCCGAGTTTTTCCTCATCCGGGACACAAGCCTCATTCCCAATGTGCTCTGGTTTGAGTACACAGTAACCAGGGCAGAAGCCAG
Seq C2 exon
GAACAGACAACGCAAACTGGGGACAAAACTGCAGTGACTGGTGGATGTGACTGGGTAAAGCCTCCGAATCTGGCCTGCACCATGCCTTGCAGGATGGACAGAAAGATGAATGAGGGGTGAAGCAGAGACCTCTGCAGACCCGAGTCACCAAGTGGAGCCTTTTTTTTTCCTTATTTTAATTTTAATGGACACGGTGGACCAAAGTGCTGAGTCAGGTCCTCAGCCAGGACCCTGGGAGGACCTGCTGTGTGTGGGTCACATGGCCGGAGCCCCTCTCTGCTGCTGCCAGCTCCTGACTGGGTGGAAAGTGCTCTTGGCATGGGCCTCAGCGTGTGGGCAGAGCACGGTAGAGTGCTTGCACCTCTGGTCCTGAGATCAGGACTCCAGGTAGTGGAGTGCGCACTATTTATTCTCTTGGGATTGTAGAGTTCATGCTGGAGAGGCTGCTCTGCAGGGGCTGCCCTGTGTACAAAGGGCCCAGGTTAGCTCCCAGACCCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017663_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PD(25.4=75.0)
A:
PF0156916=PAP2=PD(10.2=35.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCAGGTGTTTTATGGGGG
R:
GCCAGATTCGGAGGCTTTACC
Band lengths:
179-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]