MmuEX1008920 @ mm10
Exon Skipping
Gene
ENSMUSG00000026856 | Dolpp1
Description
dolichyl pyrophosphate phosphatase 1 [Source:MGI Symbol;Acc:MGI:1914093]
Coordinates
chr2:30397019-30400529:+
Coord C1 exon
chr2:30397019-30397147
Coord A exon
chr2:30397468-30397557
Coord C2 exon
chr2:30399142-30400529
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTGGGTATCTGTCTCTCCAGGCC
3' ss Score
8.06
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGTCTACCTGCTGTACCACACCTGGAGCCAGGTGTTTTATGGGGGCGTGGCTGGAAGCCTCATGGCCGTCGCCTGGTTCATCATCACGCAGGAAATCCTCACTCCGTTGTTCCCCAGGATAGCAGCCTG
Seq A exon
GCCCATCTCCGAGTTTTTCCTCATCCGGGACACGAGCCTCATTCCCAATGTGCTCTGGTTTGAGTACACAGTAACCAGGGCAGAAGCCAG
Seq C2 exon
GAACAGACAGCGCAAACTTGGAACAAAACTGCAGTGACTGGTGGGTGTGGCTGCGTCTAGCCTCCGAATCTGGCCTGCACCATGCCTTGCAGGATGGACAGAATGATGGATGGAGGGGTGAAGCAGAGACCTCTACAGACCAGAGTCACCAAGTGGAGCCTTTTTTTTTCTTATTTTAATTTCAATGGACACGGTGGACCAAAGTGCTGAGTCAGGTCCTCAGCCAGGACCCTGGGAGGGCCTGCTGTGTGTGGGTCACATGGCCAGAGCCCATCTCTGCTGCTGCCAGCTCCTGGCTGGGTGGAAAGTGCTCTTGGCACGGGCCTCAGCGTGCGTGTAGAGCGTGTGTACCTCTGGTCCTGAGATCAGGAAGTGCAGGTAGCGGAATGCGCACTATTTATTCTTTTGGGATTGTGGAGTTCATGCTGAAGAGGCCACTCTGCAGCAGCTGCCCTGTGTACACAGGGCCCAGGTTAGCTCCCAGACCCTGTGCTCTGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026856-'15-17,'15-15,17-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PD(26.0=77.3)
A:
PF0156916=PAP2=PD(10.2=35.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGCAGGAAATCCTCACTCC
R:
TCTCTGCTTCACCCCTCCATC
Band lengths:
174-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types