BtaEX0011910 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017922 | DOLPP1
Description
Bos taurus dolichyl pyrophosphate phosphatase 1 (DOLPP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192041]
Coordinates
chr11:99568365-99573250:+
Coord C1 exon
chr11:99568365-99568464
Coord A exon
chr11:99569941-99570030
Coord C2 exon
chr11:99571788-99573250
Length
90 bp
Sequences
Splice sites
3' ss Seq
CTGGGTGTCTGTCTCTCCAGGCC
3' ss Score
9.65
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTCCCCACACGGCAGTGGGCACCAAGTACGGGATGCCCTCCAGTCACTCCCAGTTTATGTGGTTCTTCTCCATCTATTCCTTCCTTTTTCTGTATTTAAG
Seq A exon
GCCTATCTCTGAGTTCTTCCTAATCCGAGACACGAGCCTTATTCCCAATGTCCTCTGGTTTGAATACACAGTAACCCGAGCAGAAGCCAG
Seq C2 exon
GAACAGACAGCGCAAGCTGGGGACGAAGCTGCAGTGACGGGTGAGCGTGGCTGGCTCCAGCCTCCAGATCTGGCCTGCATGATGCCTTGCAGGATGGATGGAATGACAGGCAGGGACGAAGCAGAGACCTCTACAGATCCAAGTCACCGAGTGGAGCCTTTTTTTTGCTTATTTTAGTTTTGATGAACACAGTGGACCAAAGGGCTGAGCCAGCCCCTCAGCCAGGACCTTGGAGGGCCTGCTGCTGGCGGGGGAGGGGGCTCATGGCCAGAGACCCTCGCAGTGCTGCTGCCAGTCCCCGGTCGGGCAGAGAGTGCCCTTGGCATGGGCACCGGGGTGTGGGGTAGAGAAGGAGGGCTCGCACCTCTGGTCACAGGGCCAGGAAATCCAGGTGGCGTGAAAAATGCACACTATTTATTTTTGGGTTTTGTCAAAGGCAGATGGGATTTTGGAGAGGAGGCTAGCAGAGCCTGCTCTGCGGGGGCCTCCTTGCGTACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017922_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(25.4=100)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCAGTCACTCCCAGTTT
R:
ATTCCATCCATCCTGCAAGGC
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development