BtaEX0011909 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017922 | DOLPP1
Description
Bos taurus dolichyl pyrophosphate phosphatase 1 (DOLPP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192041]
Coordinates
chr11:99568365-99570030:+
Coord C1 exon
chr11:99568365-99568464
Coord A exon
chr11:99569314-99569442
Coord C2 exon
chr11:99569941-99570030
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGCCTCTGCCCTTGGCCCAGGGT
3' ss Score
5.37
5' ss Seq
CTGGTAACT
5' ss Score
5.45
Exon sequences
Seq C1 exon
GTCCCCACACGGCAGTGGGCACCAAGTACGGGATGCCCTCCAGTCACTCCCAGTTTATGTGGTTCTTCTCCATCTATTCCTTCCTTTTTCTGTATTTAAG
Seq A exon
GGTCTACCTGCTGTACCATACCTGGGGGCAAGTGCTCTACGGGGCCGTCGCTGGGGGCCTGATGGCCGTCGCCTGGTTCGTCTTCACCCAGGAGGTCCTCACCCCGCTGTTCCCTAGGATAGCAGCCTG
Seq C2 exon
GCCTATCTCTGAGTTCTTCCTAATCCGAGACACGAGCCTTATTCCCAATGTCCTCTGGTTTGAATACACAGTAACCCGAGCAGAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017922_MULTIEX1-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(25.4=100)
A:
PF0156916=PAP2=PD(25.4=75.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACCAAGTACGGGATGC
R:
GCTTCTGCTCGGGTTACTGTG
Band lengths:
170-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development