HsaEX0020698 @ hg19
Exon Skipping
Gene
ENSG00000167130 | DOLPP1
Description
dolichyl pyrophosphate phosphatase 1 [Source:HGNC Symbol;Acc:29565]
Coordinates
chr9:131847797-131849077:+
Coord C1 exon
chr9:131847797-131847895
Coord A exon
chr9:131848418-131848546
Coord C2 exon
chr9:131848988-131849077
Length
129 bp
Sequences
Splice sites
3' ss Seq
CGCTTCTGGCCTTGGCCCAGGGT
3' ss Score
4.2
5' ss Seq
CTGGTAACT
5' ss Score
5.45
Exon sequences
Seq C1 exon
AATGCACCAAACAAACAACGCCAGGTTCCTGGACTTGCTGTGGAGGCACGTGCTCTCCCTGGGACTCCTCGCTGTGGCCTTCCTAGTCTCCTACAGCAG
Seq A exon
GGTCTACCTGCTGTACCACACCTGGAGCCAGGTGCTCTATGGAGGCATCGCTGGAGGCCTCATGGCCATCGCCTGGTTCATCTTCACCCAGGAGGTCCTCACCCCGCTGTTCCCCAGGATAGCAGCCTG
Seq C2 exon
GCCTGTCTCCGAGTTCTTCCTAATCCGAGACACAAGCCTCATTCCCAACGTACTCTGGTTTGAGTACACGGTAACCCGGGCAGAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167130_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(25.2=100)
A:
PF0156916=PAP2=PD(26.0=77.3)
C2:
PF0156916=PAP2=PD(10.2=35.5)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCACCAAACAAACAACGCC
R:
GCTTCTGCCCGGGTTACC
Band lengths:
186-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)