DreEX0028070 @ danRer10
Exon Skipping
Gene
ENSDARG00000036915 | dolpp1
Description
dolichyldiphosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-041024-11]
Coordinates
chr21:3744942-3748382:+
Coord C1 exon
chr21:3744942-3745040
Coord A exon
chr21:3748023-3748151
Coord C2 exon
chr21:3748293-3748382
Length
129 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTTTATAGAGT
3' ss Score
8.23
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
AATGCATCAGACGAACAATGCTCGGTGTGTTGAATTGTTATGGCGGCATATATTGTCCATCATGCTACTGGCCGTGGCGTTGTCTGTTTCATACAGCAG
Seq A exon
AGTTTACCTCCTGTACCACACCTGGAGTCAGGTGATTTATGGGGGCGTGGCTGGGCTCGTGATGGGCGTGGTTTGGTTTTTTATCACCCAGGAGGTGCTAACGCCACTCTTTCCCAAGATAGCAGCCTG
Seq C2 exon
GCCGATCTCAGAGTTTTTCTTGGTGAGAGATACAAGTCTCATTCCCAACATCCTGTGGTTTGAATATACAGTAACCAGATCAGAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036915-'5-6,'5-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(25.6=100)
A:
PF0156916=PAP2=PD(25.6=75.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCAGACGAACAATGCTCG
R:
CTGGCTTCTGATCTGGTTACTGT
Band lengths:
186-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]