RnoEX0029454 @ rn6
Exon Skipping
Gene
ENSRNOG00000017663 | Dolpp1
Description
dolichyldiphosphatase 1 [Source:RGD Symbol;Acc:1307447]
Coordinates
chr3:8961768-8963475:+
Coord C1 exon
chr3:8961768-8961852
Coord A exon
chr3:8962918-8963046
Coord C2 exon
chr3:8963386-8963475
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTGGCTTTGTCCCAGGGT
3' ss Score
7.95
5' ss Seq
CTGGTAACC
5' ss Score
4.51
Exon sequences
Seq C1 exon
ATTTCATTCCTCGGGGGACTGGCACTGAATGAGGGTGTCAACTGGCTGATCAAACACGTCATCCAGGAGCCTCGGCCCTGTGGAG
Seq A exon
GGTCTACCTGCTGTACCACACCTGGAGCCAGGTGTTTTATGGGGGTGTTGCTGGAGGCCTCATGGCCATCGCCTGGTTCGTCATCACCCAGGAGATCCTCACCCCGTTGTTCCCCAGGATAGCAGCCTG
Seq C2 exon
GCCCATCTCCGAGTTTTTCCTCATCCGGGACACAAGCCTCATTCCCAATGTGCTCTGGTTTGAGTACACAGTAACCAGGGCAGAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017663_MULTIEX1-3/4=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(25.9=100)
A:
PF0156916=PAP2=PD(25.4=75.0)
C2:
PF0156916=PAP2=PD(10.2=35.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCATTCCTCGGGGGACTGG
R:
GCTTCTGCCCTGGTTACTGTG
Band lengths:
171-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]