GgaEX1020789 @ galGal4
Exon Skipping
Gene
ENSGALG00000004485 | DOLPP1
Description
dolichyldiphosphatase 1 [Source:RefSeq peptide;Acc:NP_001025860]
Coordinates
chr17:5477916-5489701:+
Coord C1 exon
chr17:5477916-5478012
Coord A exon
chr17:5488583-5488711
Coord C2 exon
chr17:5489612-5489701
Length
129 bp
Sequences
Splice sites
3' ss Seq
ACTTTTCTCTTCCACTGCAGGGT
3' ss Score
10.98
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
CCGGCCCGGTATCCGGGTAAGATGGCCGCAGTCGGAGAGTGCTCGCTCCCCGCTCCGTGGCGGCCGGTCTCCCTCACTCACGTCGAGTATCCCGCAG
Seq A exon
GGTTTATTTGCTTTACCACACCTGGAGCCAAGTCTTATATGGAGGTGTGGCAGGAAGCGTTATGGCCATAGCCTGGTTTGCCTTCACACAAGAGATACTAACTCCTCTCTTCCCAAGGATAGCTGCATG
Seq C2 exon
GCCCATTTCAGAGTTCTTTTTAATCCGAGACACCAGCCTCATTCCTAACATCCTGTGGTTTGAATATACAGTCACAAGAGCAGAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004485_MULTIEX1-6/6=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0156916=PAP2=PD(25.4=75.0)
C2:
NO
Main Skipping Isoform:
ENSGALT00000007143fB6930
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTATCCGGGTAAGATGGCCG
R:
TGCTTCTGCTCTTGTGACTGT
Band lengths:
178-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]