BtaEX0011975 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003388 | DPM2
Description
Bos taurus dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit (DPM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046268]
Coordinates
chr11:98612580-98615321:-
Coord C1 exon
chr11:98615232-98615321
Coord A exon
chr11:98614346-98614448
Coord C2 exon
chr11:98612580-98613201
Length
103 bp
Sequences
Splice sites
3' ss Seq
AGCTCTGCCTTTGATGCCAGCCA
3' ss Score
2.9
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GCCACGGGAACAGACCAAGTGGTGGGCCTCGGCCTCGTCGCCCTTAGCCTGATCATCTTCACTTATTACACCGCCTGGGTAATTCTCTTG
Seq A exon
CCATTCATCGACAGTCAGCATGTCATCCACAAGTATTTCCTGCCCCGAGCCTATGCCATTGCTATCCCACTGGCCGCCGGCCTCCTGCTGCTCCTGTTTGTGG
Seq C2 exon
GTATATTCATCACCTACGTGATGCTGAAGAACCAGAACGATACCAAAAAGACTCAGTGAAGGCCCAGCAGGAATGAGGCTGCTGGCCCCGTCTCTGCTTCTTCTCCAGGGCAGACCCAACAAGGGTGCCCACAGGACCCATTCAGGCACTGAGGCCCCGTCAAGCCTGATTGCCCTGCAGACACCCCTGTGGGATGGAAGCTGTTCAGGACTCACCCCTGGCTGACCAGGGCCCCTGCTCCTCCTTCCAGAAGCCAGGGAGGAGAAGTACCTGGAAGTCTCCATCTCACCCCCATTCTGGCTCAGGGCCTGCAAGGTGCTGGTCCCTCTCCACATACACACACACCTCACCTTGACTCCCTCTCATTTTTCCCGCTGGGTTCTACACTTGCCTCAGTTTCCTTCTTGTCACATGATGGTGTTGGACTTGGCAGGTTCTGGGACATCACGTGACCTCTCCCCACATGTCCTGCTCCTCCACAAAGGCAACCTTCCCAGGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003388_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.105
Domain overlap (PFAM):
C1:
PF139031=Claudin_2=PU(34.9=96.7),PF072977=DPM2=PU(33.8=90.0),PF085107=PIG-P=PU(32.5=86.7)
A:
PF139031=Claudin_2=FE(41.0=100),PF072977=DPM2=FE(42.5=100),PF085107=PIG-P=FE(42.5=100)
C2:
PF139031=Claudin_2=PD(21.7=90.0),PF072977=DPM2=PD(21.2=85.0),PF085107=PIG-P=PD(22.5=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCCTTAGCCTGATCATCTT
R:
GAACAGCTTCCATCCCACAGG
Band lengths:
258-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development