DreEX0028183 @ danRer10
Exon Skipping
Gene
ENSDARG00000095623 | dpm2
Description
dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit [Source:ZFIN;Acc:ZDB-GENE-030131-9093]
Coordinates
chr5:31114205-31115706:-
Coord C1 exon
chr5:31115617-31115706
Coord A exon
chr5:31115388-31115490
Coord C2 exon
chr5:31114205-31114798
Length
103 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTGCTCTTATTCCAGCCT
3' ss Score
7.49
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
GCAACCGGAGCAGATCAAGCTGTTGGCTTTGGACTCGTTGGCTTTAGTCTTTTGCTGTTCACATATTACTCCATTTGGGTGGTAGTCTTG
Seq A exon
CCTTTCGTAGACAGTGACCATGTGATACACAGCTATTTTCTTCCACGAGAATATTCAGTCATACTTCCTGGCATCGCAGCATTAATCCTCTTGCTCTTTGTTG
Seq C2 exon
GCACATTCATAGGGATCGTAACATGGAAGAATCGAAAACCTAAGAAAGTTGATTAAGACTCTCCAGGTTGTTGTGATTCGTACTGCAGCAAGAATGATCAGCGTTGGTTTTACTCATCCATGTGAAGAGGATGAACTTCTGGAATCCAGTCATTTGTCATGTTCAGGTGCTGTAGTTGTTAAAATGAACATCAAAATAGAGTTAACTAATTCACCAAAGCCGTACTGAACATGTACACAATAATAGTCTACCTGAGCTTTGTACATCTAGTAGCTACAACATTGACTCAAGACCATGCTAGTAGTGCAATGATTTAGGGAATTAGCGTGAATAATACATAAGATGATAAAATAGGCACATAAGACATGTGTGTAGTTTAGAGCACATCTAAATGAAATATGGGAGTAATGTTTCATTGTTCTTGTACTATGCTTTAAGTCTGTGTGTTTCAGCTGTTCTCTTGTTTTGTAAATAGACATATTTATGAGGTAGAGTGCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095623_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072977=DPM2=PU(34.2=90.0),PF085107=PIG-P=PU(33.8=86.7)
A:
PF072977=DPM2=FE(43.0=100),PF085107=PIG-P=FE(44.2=100),PF055456=FixQ=PU(48.6=48.6)
C2:
PF072977=DPM2=PD(20.3=84.2),PF085107=PIG-P=PD(19.5=78.9),PF055456=FixQ=PD(48.6=89.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGCTTTGGACTCGTTGG
R:
ACTACAGCACCTGAACATGACA
Band lengths:
246-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]