Special

MmuEX6100569 @ mm9

Exon Skipping

Gene
ENSMUSG00000026810 | Dpm2
Description
dolichol-phosphate (beta-D) mannosyltransferase 2 [Source:MGI Symbol;Acc:MGI:1330238]
Coordinates
chr2:32426726-32429099:+
Coord C1 exon
chr2:32426726-32426815
Coord A exon
chr2:32427817-32427919
Coord C2 exon
chr2:32428479-32429099
Length
103 bp
Sequences
Splice sites
3' ss Seq
GCTCTTGCCCTTGGTGCCAGCCA
3' ss Score
3.19
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GCCACCGGGACAGACCAAGCAGTAGGATTTGGCCTTGTCGCCGTTAGCTTGATCATCTTCACCTACTACACCACTTGGGTGATTCTCTTG
Seq A exon
CCATTCATTGACAGCCAGCATGTCATCCACAAATACTTCCTGCCCCGCGCCTACGCCGTCCTCCTCCCGTTGGCCGCAGGCCTCCTGCTGCTCCTATTTGTGG
Seq C2 exon
GATTGTTCATCACCTATGTGATGCTGAAGAGCCAGAAGATAACCAAGAAGGCTCAGTGAAGGTCCAGCAGGGATGAGGCTGTAGGGGCCTTCTCCATATCTCCTCCAGAAAAGGGACCAAGGGTCACAGCTTACAAGATGGTCAAGCTGGCTGCACTGCAGCCCTCTTTGGGACATGGGGCTGTTTTCTTCTCAGTTTGACAACCTGGAGCCCTCTCTCTCTTGGTCATCCTTTTAGAAGCCAAGAGAAAGGTGGGTTGGGAAGCCTCTCACTTCCCTTAGGCTCAGAGGCTGAACATTGCTGGTTGGTCCTGTCCATCTCACAGTCAAAGCTCCCTGTCCCTTCCACCGAGTTCTCTCCTCTCACCTCTGTGCTCCTCCCACTGTGCTGATGGATTGAGCAGGCCTTCCCGCCTCTCTGTACAAGTCCTGTCCCGTCACAAGGCAGCTCTTCCGAGTCTGACACTTCCCAGGCTCCATGAGGACTTCTGGACCCAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026810-'1-4,'1-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF072977=DPM2=PU(33.8=90.0),PF085107=PIG-P=PU(32.5=86.7)

							
A:
PF072977=DPM2=FE(42.5=100),PF085107=PIG-P=FE(42.5=100)

							
C2:
PF072977=DPM2=PD(21.2=85.0),PF085107=PIG-P=PD(22.5=90.0)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000028151





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000124665
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr9:127936553-127936655 
HIGH PSI
HsaEX0020817
(DPM2)
Human
(hg19)
chr9:130698832-130698934 
HIGH PSI
HsaEX0020817
(DPM2)
Rat
(rn6)
chr3:11589153-11589255 
HIGH PSI
RnoEX0029612
(Dpm2)
Cow
(bosTau6)
chr11:98614346-98614448 
ALTERNATIVE
BtaEX0011975
(DPM2)
Chicken
(galGal4)
chr17:4866736-4866838 
HIGH PSI
GgaEX1020875
(DPM2)
Chicken
(galGal3)
chr17:5502362-5502464 
HIGH PSI
GgaEX1020875
(DPM2)
Zebrafish
(danRer10)
chr5:31115388-31115490 
HIGH PSI
DreEX0028183
(dpm2)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CCTTGTCGCCGTTAGCTTGAT

				
R: 
GAAAACAGCCCCATGTCCCAA

				
Band lengths: 
246-349

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"