GgaEX1020875 @ galGal3
Exon Skipping
Gene
ENSGALG00000005066 | DPM2
Description
NA
Coordinates
chr17:5501231-5503544:+
Coord C1 exon
chr17:5501231-5501320
Coord A exon
chr17:5502362-5502464
Coord C2 exon
chr17:5502728-5503544
Length
103 bp
Sequences
Splice sites
3' ss Seq
GCCCCGCTCTGTTTCTGCAGCCC
3' ss Score
10.17
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GCCACGGCGACGGACCGGGCGGTAGGGTTCGGCTTGGTGGCCTTCAGCCTCATTCTCTTCGTATACTACACGCTGTGGATCATCGTGCTG
Seq A exon
CCCTTCATCGACAGCGACCACAGCATCCACCAATACTTCTTGCCCAGGGAGTATGCAGTTATCATCCCTGTGGTGGCTGGGCTGCTGCTGCTGCTATTTATAG
Seq C2 exon
GTGTTTTTATAATGGTTGTGATGTGGAAGAGCAGAAAACCTGCCAAGAAATCAGACTGAAGGCCCAGCTGAGAGATGGAGAGAAGGCCCCCACCCTGCAGCACCCAGGCTGGGAGGAGCCAGCCTGCAGCACTAAGCAGCCACCTCCTCCAGAGCACTCTCGAAGCAGCAGCAGCGCCAAGCTGGCTGCTCTCTCTCCTACATTCCTTCCTCAAAAGATGCAGACTTGCATAGTTTACAACTTATTGACTAAAGGGAAGCAAAACTGACCTACGGGACTCACCAGGAGAGGGACCAGAGCTCCAATTAGGACAAATCTGCACCCCAGCTGAGGCTACGTGCAGGAGCTGTGCTGGGCTGGAATCTGTCGGGGTCCAGCAGCAATAATTGCAGAGTGTGAGTTCAGTTCTAGCCCCCATCAGGTGCTTGGCCTCTGGGTAATCTTTCCCCTCTGCTCTTGCTGCATACAGTAGTTTATTCCTTCTGGGATTTTTTTTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005066-'2-3,'2-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.053
Domain overlap (PFAM):
C1:
PF072977=DPM2=PU(33.8=90.0),PF0175811=SBF=PU(37.7=96.7),PF085107=PIG-P=PU(34.2=90.0)
A:
PF072977=DPM2=FE(42.5=100),PF0175811=SBF=FE(44.2=100),PF085107=PIG-P=FE(43.0=100),PF151021=TMEM154=PU(62.0=88.6),PF046898=S1FA=PU(50.0=54.3)
C2:
PF072977=DPM2=PD(21.2=85.0),PF0175811=SBF=PD(15.6=60.0),PF085107=PIG-P=PD(20.3=80.0),PF151021=TMEM154=PD(36.0=90.0),PF046898=S1FA=PD(47.4=90.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCAGCCTCATTCTCTTCG
R:
TGTAGGAGAGAGAGCAGCCAG
Band lengths:
253-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]