RnoEX0029612 @ rn6
Exon Skipping
Gene
ENSRNOG00000049110 | Dpm2
Description
dolichyl-phosphate mannosyltransferase subunit 2, regulatory [Source:RGD Symbol;Acc:2514]
Coordinates
chr3:11587941-11590528:+
Coord C1 exon
chr3:11587941-11588030
Coord A exon
chr3:11589153-11589255
Coord C2 exon
chr3:11589908-11590528
Length
103 bp
Sequences
Splice sites
3' ss Seq
GCTCTTGCCCTTGGTACCAGCCA
3' ss Score
3.16
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GCCACCGGGACAGACCAAGCGGTGGGATTTGGCCTTGTCGCCGTTAGCTTGATCATCTTCACCTACTACACCACTTGGGTGATTCTTTTG
Seq A exon
CCATTCATTGACAGCCAGCATGTCATCCACAAGTACTTCCTGCCCCGTGCCTACGCTGTCCTCCTCCCATTGGCCGCAGGCCTCCTGCTGCTCCTGTTTGTGG
Seq C2 exon
GGTTGTTCATCACCTATGTGCTGCTGAAGAGCCAGAAGGTGACCAAGAAGGCTCAGTGAAGGTCCAGCGGGGATGAGGCTGCAGAGGCCGCCTCCACATCTCCTCCAGGGAAGGGACCAAGGGTCACAGCCTACAAGACAGGCTGGCTGCACTGCAGCCCTCTTTGGGACATGGGGCTGCTTACGACTCAGTTTGACAAACTGGAACCCTCTCTCTCTCTCGGTCATCCTTTTAGAAGCCGAGAAGAAGGTGGGGTGGGAAACCTCTTGCTCACTCCCTTGGGGCTCAGAGGCTGAGCAGTGCTGGTCCTGTCCACCCCACAGTCAAAGCTCCCTGTCCCTTCTACGGAGTTGTGTTCTCTCACCTCCGTTCTCCTGCTGTGCTGATAGGCCGAGCAGGCTCCAGGATGTGTGCAGCCTTCTCGCCTCTCTGTACAAATCCTGTCCCTTCACAAGGCAGCTCTTCCGAGTCTGACACTTCCAGGCTCCATGAGGACTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049110-'2-4,'2-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072977=DPM2=PU(33.8=90.0),PF085107=PIG-P=PU(32.5=86.7)
A:
PF072977=DPM2=FE(42.5=100),PF085107=PIG-P=FE(42.5=100)
C2:
PF072977=DPM2=PD(21.2=85.0),PF085107=PIG-P=PD(22.5=90.0)
Main Skipping Isoform:
ENSRNOT00000071505fB4441
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGTCGCCGTTAGCTTGAT
R:
AAACTGAGTCGTAAGCAGCCC
Band lengths:
252-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]