BtaEX0012069 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019876 | DSC1
Description
Bos taurus desmocollin 1 (DSC1), mRNA. [Source:RefSeq mRNA;Acc:NM_174044]
Coordinates
chr24:26317707-26320911:+
Coord C1 exon
chr24:26317707-26317949
Coord A exon
chr24:26318696-26318741
Coord C2 exon
chr24:26318825-26320911
Length
46 bp
Sequences
Splice sites
3' ss Seq
TGTGCATTTTTTATATGTAGGAA
3' ss Score
8.38
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GATGCAAATATTAGACTCCCCACACAGACATCCAACGTTTGTGACACAAGCATATCTGTTGGCACACTTGGTGGCCAGGGAGTCAAAACACAGCAAAGTTTTGAGATGGTCAAAGGCGGCTACACTTTGGATGCCAACAAAGGAGGTGGACATCAGACCCTGGAATCTGTTAAGGGAGTGACGGACACTGGCAGATACACGTACAGTGACTGGCACAACTTCACCCAACCTCGGCTTGGCGAA
Seq A exon
GAATCCATTAGAGGACACACTCTGGTTAAAAATTAAACAGTAAAAG
Seq C2 exon
AAGGTGTATCTGTGCGGACAAGACGAGGAACACAAGCTCTGCGAAGACTACGTTCGCTCCTATAGCTATGAAGGCAAAGGGTCTGTGGCCGGCTCAGTGGGCTGCTGCAGCGATCGGCAGGAAGAAGAGGGGCTTGACTTCCTAGATCATCTGGAACCCAAATTTAGGACGCTAGCGAAAACATGTGTAAAGAAATAAAATGTGCCTTTTAATAGCGTAACATCTACCAGCGCATATTGAATGTAAAACAATAGCAGCATCTGCTAAAGTATTTGTTTATGGAGGTAAACTTCCAGTTGTGTATAGATAAGGCTCCCTTAAATTCTCCTTGTCTGAGATAACTTTAGTCTTCTCTAGACATCAGTGCTTCCTTTGTTAATTTCCTTTTCTATGCACGTACATTTTCTTGCCCTTTCCAGGACGGCACCGTGTGCTTTCTCACACCTTCTGTTTGAAAACTTACGTTACTTGGTATGCTCTGGAAGAGTATGTGAGGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019876_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.144 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104912=Cadherin_C=PU(45.5=67.9)
A:
NO
C2:
PF0104912=Cadherin_C=PD(52.9=97.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGACATCAGACCCTGGAA
R:
CTTCGCAGAGCTTGTGTTCCT
Band lengths:
145-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development