MmuEX0015707 @ mm9
Exon Skipping
Gene
ENSMUSG00000044322 | Dsc1
Description
desmocollin 1 [Source:MGI Symbol;Acc:MGI:109173]
Coordinates
chr18:20243204-20245371:-
Coord C1 exon
chr18:20245150-20245371
Coord A exon
chr18:20244336-20244381
Coord C2 exon
chr18:20243204-20244252
Length
46 bp
Sequences
Splice sites
3' ss Seq
TGTGCATTTTTTATATGTAGGAA
3' ss Score
8.38
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GAAGCCAATATTAGACTCCCCACACAGACAGCCAACATCTGTGATACAAGCATGTCTGTTGGGACTCTTGGTGGTCAAGGAATCAAAACACAGCAAAGTTTTGAGATGGTCAAAGGAGGCCACACCTTGGAGTCCCACAAGGGAGGAGTGCTAGGAGCAGCAGAGCCTGGCCGATATGCTTACACAGACTGGCAAACTTTCACTCAACCTCGGCTTGGTGAA
Seq A exon
GAATCCATTAGAGGACACACTCTGATTAAAAATTAAACAGTAAAAG
Seq C2 exon
AAGGTGTATTTGTGTGGGCAAGCTGAAGAACACAAGCATTGTGAAGACTACGTTCGCCCATATAACTATGAAGGCAAAGGCTCCATGGCTGGCTCTGTGGGCTGCTGCAGTGATCGGCAGGAGGAAGAAGGGCTAGAGTTTTTAGATCAATTGGAACCAAAATTTAGGACATTAGCAAAGACATGTGTGAAGAAATAAGGTGCTGGTTAATAGAGCAACTTCTGTAAATGAATACAGAGGTGACACTGGATGTAAGGGGATAGCAGCTTGTAGTAGCAACTTTGGGTATTAAAAGGAGGTAAAGTCATTTGTGGATAAGGGTGCTTTACCAATCATAGCTCCCCAAATTCTCCTTGTCTCCAGAACTTCCCTGTTGTCTAGACAGGACATTGCCACGGTTGCTTTTCTTTCTGTGCATGTATGCATTGCCCTTTCAGGACTGAACTGCATGTGCCACTAAAGTTCTGGTGATGTTTGAAACTTAAGCTCTTTTGCATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044322_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=0.818 C2=0.015
Domain overlap (PFAM):
C1:
PF0104912=Cadherin_C=FE(42.9=100)
A:
NO
C2:
PF0104912=Cadherin_C=PD(37.6=97.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCTGGCCGATATGCTTAC
R:
CCATGGAGCCTTTGCCTTCAT
Band lengths:
148-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: