RnoEX0029916 @ rn6
Exon Skipping
Gene
ENSRNOG00000056258 | Dsc1
Description
desmocollin 1 [Source:RGD Symbol;Acc:1310768]
Coordinates
chr18:11877561-11879677:-
Coord C1 exon
chr18:11879423-11879677
Coord A exon
chr18:11878597-11878642
Coord C2 exon
chr18:11877561-11878513
Length
46 bp
Sequences
Splice sites
3' ss Seq
TGTGCATTTTTTATGTATAGGAA
3' ss Score
7.77
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GAGGCAAATATTAGACTCCCCACACAGACAGTCAACATCTGTGATACAAGCACATCTGTTGGGACTCTTGGTGGCCAAGGAATCAAAACACAGCAAAATTTTGAGATGGTCAAAGGAGGCTACACCTTGGAGTCCAACAAAGGAGGTGGCCACCATACCTTGGAGTCCAGCAAAGGAGGTGTGCTAGGAGCAGCAGACACTGGCCGATATGCTTACACTGACTGGCAAACTTTCACTCAACCTCGGCTCGGCGAA
Seq A exon
GAATCCATTAGAGGACACACTCTGATTAAAAATTAAACAGTAAAAG
Seq C2 exon
AAGGTGTATTTGTGTGGACAAGCTGAGGAACACAAGCATTGTGATGACTACGTTCGCTCATATAACTATGAAGGCAAAGGCTCCATGGCTGGTTCTGTGGGTTGCTGCAGTGATCGGCAGGAGGAAGAAGGGCTAGAGTTTTTAGATCACTTGGAACCGAAATTTAGGACATTAGCAAAGACATGTGTGAAGAAATAAAGGTGCTAGTTAGTAGAGAAACATCTGCAAATGAACACAGGGGTGTCACTGGATGTAAGAGGATAACAGCTTGTAGTAGCGACTTTGGGTATTAAAAGAAAGTAAAGTCATTTGTAGATAAGGGTGCTTTACCAACCATAGCTCCCCAAATTCTCCTTGTCCCCAGAACTTGCCTGTTGTCTAGACAGGATGTTGTCACTGTTGCTTTTCTTTCTGTGCGTGTCTATGGCCTCTTCAGGACTGAACTGCGTGTGCCACTGAAATTCTGGTGATGTCTGAAACTTAAGCTCTTTTGCACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056258_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTGGAGTCCAGCAAAGGA
R:
GTGTTCCTCAGCTTGTCCACA
Band lengths:
132-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]