BtaEX0012555 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012148 | EHMT1
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 1 (EHMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001099041]
Coordinates
chr11:105480611-105493391:-
Coord C1 exon
chr11:105493325-105493391
Coord A exon
chr11:105488535-105489091
Coord C2 exon
chr11:105480611-105480791
Length
557 bp
Sequences
Splice sites
3' ss Seq
CTCTTGTTCTCTTTCTGCAGGGT
3' ss Score
11.67
5' ss Seq
CTGGTAACA
5' ss Score
4.6
Exon sequences
Seq C1 exon
CAGGCGGTTCCGGCGAAGGGGGAGACCAAGCAGGACTGCGGCCTGGGAGCTGAGCTGCCGAGCGAAG
Seq A exon
GGTCACCCATGGCTGCTGATGACGGCTCAGCGGAACAGCAGGGAGGGGAGGCCCCGGTGGCTGCAGACGGGGAGACCAACGGGTCCTGTGACCAGAGCGATGCCAGTGGCCACGCGGCTGCTGTGAAGCACCCTCAGGAGAGCACACGAGGCAGCCCTCAGGAAGGGGCCGGCCCGGGGTCCCGGATAGCGGAAAATGGGATTTTGGACAGAGACCCCGAGGTGGGGAAGCAGAACCACATCCGCTCTGATGGCTTCCCCCAGAATCCTGTCATTGGGAGCAACGGCTACTTCCTTGGCAAGGCCCCCTTGTCTGAGCCACCACTGCGGGTGGCCAGCGCCCTGGCTTCCTCCCTGCCTGGCCACGCGGCGAAGACCCTCCCTGGCGGGGCTGGCAAAGGGAGGACTCCCGGTGCTTTTCCCCAGCCGCCGGCTGCTGTGCCGGCCAAGCCTGGGGAGGGCAGCAAGGACACAGAGGACAAGAAGGCCCCGGCCCCGGGCGCCGACGTCAAGGTCCACAGGGCTCGGAAGACCATGCCGAAGTCCATCCCGGGCCTG
Seq C2 exon
CACGCGGCGAGTAAGGACCCCAGGGAAGGCCGGGACGCCCGCGACCACGAGGAGCCGAAGGAGGAGCTGAGCAGGGGCGCCTCGGAGTTCGCACGCCAGCAGCTTTCACCCCCCTTCCCGTCCCTTCACCAGTCGCTACCTCAGAACCAATGCTACGTGGCCACCGCGAAGGCCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012148-'0-3,'0-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSBTAT00000016118fB2374
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCGGCGAAGGGGGAG
R:
TTCGCGGTGGCCACGTAG
Band lengths:
231-788
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development