GgaEX1021842 @ galGal4
Exon Skipping
Gene
ENSGALG00000008472 | EHMT1
Description
histone-lysine N-methyltransferase, H3 lysine-9 specific 5 [Source:RefSeq peptide;Acc:NP_001012550]
Coordinates
chr17:2025623-2042530:+
Coord C1 exon
chr17:2025623-2025713
Coord A exon
chr17:2032942-2033498
Coord C2 exon
chr17:2042353-2042530
Length
557 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCCCTCTGTCTCCAGGGT
3' ss Score
12.78
5' ss Seq
CTGGTAATG
5' ss Score
5.67
Exon sequences
Seq C1 exon
CAGCAAACAGTGCTGAGTAAGGGAGAGACAAGGAAAGACGCCTGCATGAAGACTGAACTGCTGAAAGATATCACCAACAACAAGGAGGAAG
Seq A exon
GGTTCAATGCCATGGCTGCGGATGAAAGTGCTACAGAAAAGCAAGTGGGGGAACCAAAAATGGCTGTAGACGGTGAAACCAACGGTTCCTGTGAGCACGGCGAGGCTGGGAGCCACCCAAACCCAGCAAAAAACACTCAGGACAATACGAAAGTGAGCCAGCAGGACTCTAGTACTAAATTAAATAGGATAGCAGAAAATGGCATTTCTGAACGAGATGGTGAGACTGGGAAGCAAAACCATATGAAAGCTAATGACTTCACACAGACTTCTCTAACAGGGAGCAATGGATATATTCTAACCAAGCAGATGGCGCAGGAGCAACCTCTAAGGACTACCAGCACCTTTGCTTCTCTCACTGGCCATGCTGCAAAAACCCTTCCAGGAGGAGCAAGCAAAGGGAGAACTGTGGGCACCTTTTCTCAGATGCAAGCCACGATGCCAACCAAGCTCGGGGAGGGCAGTAAGGACATGGATGCTAAAAAAGCCACTGCTGCTAACGCTGAAGTCAAGGTCCACAGAGCACGGAAGACAATGCCTAAACCCACCCCTAGCCTG
Seq C2 exon
CATGCAAGTAAAGACCCCAAAGATGGGAGAGACAGCAGAGATCAAAAAGAATCTAAAGAGGAAGGCAACAAAAACATCCTGGAGTTTGGGAAGCCGTTGCCATTGCCCTCTCTCCCGGGCCTTCACCAGTCACTACCTCAGAACCAGAGCTATGTGGCCACCTCGAAGTCGCAGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472_MULTIEX3-2/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGCTGAGTAAGGGAGAGA
R:
CGTCTGCGACTTCGAGGTG
Band lengths:
262-819
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]