GgaEX1021842 @ galGal3
Exon Skipping
Gene
ENSGALG00000008472 | F1P2X9_CHICK
Description
NA
Coordinates
chr17:2432929-2449833:+
Coord C1 exon
chr17:2432929-2433016
Coord A exon
chr17:2440245-2440801
Coord C2 exon
chr17:2449656-2449833
Length
557 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCCCTCTGTCTCCAGGGT
3' ss Score
12.78
5' ss Seq
CTGGTAATG
5' ss Score
5.67
Exon sequences
Seq C1 exon
CAAACAGTGCTGAGTAAGGGAGAGACAAGGAAAGACGCCTGCATGAAGACTGAACTGCTGAAAGATATCACCAACAACAAGGAGGAAG
Seq A exon
GGTTCAATGCCATGGCTGCGGATGAAAGTGCTACAGAAAAGCAAGTGGGGGAACCAAAAATGGCTGTAGACGGTGAAACCAACGGTTCCTGTGAGCACGGCGAGGCTGGGAGCCACCCAAACCCAGCAAAAAACACTCAGGACAATACGAAAGTGAGCCAGCAGGACTCTAGTACTAAATTAAATAGGATAGCAGAAAATGGCATTTCTGAACGAGATGGTGAGACTGGGAAGCAAAACCATATGAAAGCTAATGACTTCACACAGACTTCTCTAACAGGGAGCAATGGATATATTCTAACCAAGCAGATGGCGCAGGAGCAACCTCTAAGGACTACCAGCACCTTTGCTTCTCTCACTGGCCATGCTGCAAAAACCCTTCCAGGAGGAGCAAGCAAAGGGAGAACTGTGGGCACCTTTTCTCAGATGCAAGCCACGATGCCAACCAAGCTCGGGGAGGGCAGTAAGGACATGGATGCTAAAAAAGCCACTGCTGCTAACGCTGAAGTCAAGGTCCACAGAGCACGGAAGACAATGCCTAAACCCACCCCTAGCCTG
Seq C2 exon
CATGCAAGTAAAGACCCCAAAGATGGGAGAGACAGCAGAGATCAAAAAGAATCTAAAGAGGAAGGCAACAAAAACATCCTGGAGTTTGGGAAGCCGTTGCCATTGCCCTCTCTCCCGGGCCTTCACCAGTCACTACCTCAGAACCAGAGCTATGTGGCCACCTCGAAGTCGCAGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472-'2-5,'2-3,6-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGCTGAGTAAGGGAGAGA
R:
CGTCTGCGACTTCGAGGTG
Band lengths:
262-819
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]