RnoEX0031248 @ rn6
Exon Skipping
Gene
ENSRNOG00000007242 | Ehmt1
Description
euchromatic histone lysine methyltransferase 1 [Source:RGD Symbol;Acc:1307588]
Coordinates
chr3:2051009-2060167:-
Coord C1 exon
chr3:2060098-2060167
Coord A exon
chr3:2057181-2057737
Coord C2 exon
chr3:2051009-2051180
Length
557 bp
Sequences
Splice sites
3' ss Seq
ACTCCTTTCAATGTTCACAGATA
3' ss Score
9.37
5' ss Seq
CTGGTAATT
5' ss Score
5.99
Exon sequences
Seq C1 exon
CAGCAGGCAGTTCTGGCCAAGCAAGAGACCAAGCAGGATTGCTGCATGAAAACTGAACTGCTAAGGGAAG
Seq A exon
ATACACTTATGGCTGCTGATGAAGGTTCCACAGAGAAGCAAGCAGGAGAGACTCCTATGGCTGCAGATGGAGAAACCAATGGGTCTTGTGAAAAGAGTGGCGATATCAGCCATCCAAATGCACCCAAACATACTCAGGAGAACACAAGAGCTAGCCCACAGGAAGGCACCAACAGAGTATCTCGGGTGGCGGAAAATGGGGTTTCAGAAAGAGACACAGAAGTGGGGAAGCAAAACCATGTTACAGCTGACGACTTCATGCAGACGTCTGTCATTGGAAGCAATGGATATTTCTTAAATAAACCAGCCCTGCAGGGACAGCCCTTGAGGACTCCCAACACTCTAAATTCCTCGCTTCCTGGTCATGCCGCAAAAACGCTTCCTGGAGGAGCCAGTAAGTGCAGGACTCCAAGTGCACTTCCTCAGACACCAACCACAGCACCCACTGTGCCTGGGGAAGGGAGTGCAGACACAGAGGACAGAAAGCCTACAGCCTCGGGCACTGATGTCAGGGTTCACAGGGCACGCAAGACCATGCCGAAGTCCATCCTGGGCCTG
Seq C2 exon
CACGCAGCCAGTAAAGACCATAGAGAAGTTCAAGACCATAAGGAACCAAAAGAGGATATCAACAGAAACATTTCTGAATGTGGACGACAGCAGCTTTTACCAACTTTCCCAGCCCTCCACCAGTCGCTACCTCAGAATCAATGCTACATGGCCACCACAAAGTCCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007242_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.952
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCTGGCCAAGCAAGAGAC
R:
CTGTCTGGGACTTTGTGGTGG
Band lengths:
234-791
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]