DreEX6083705 @ danRer10
Exon Skipping
Gene
ENSDARG00000026634 | ehmt1b
Description
euchromatic histone-lysine N-methyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-080515-3]
Coordinates
chr21:14567980-14570855:-
Coord C1 exon
chr21:14570768-14570855
Coord A exon
chr21:14568299-14568786
Coord C2 exon
chr21:14567980-14568142
Length
488 bp
Sequences
Splice sites
3' ss Seq
TTAATGTTATTTCCACATAGGAG
3' ss Score
7.42
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CCCTCCAGTTTGGCCAATGGGAATTCAGGCAAGAGGGAAACCATGAAGTCCGAGGGGACAAAAGAGTCTCGCAGTGATCAAGAAGAAG
Seq A exon
GAGGAGATGATGATCACCAGGATGGGCGAACAGGCCCTCTTAGAGAGGCCATTGAGCAGAATGGGACCTATGAAAATATGGACACAAAGAGAAATGAACAGAACCTCTCTACACAAGGGTCACCAGCACGACCCTCAACCATGGAGAATGGGCTATCAGAAACTGAGCCACCGCATGGCTCAAAAGTAGGCAGTAATGGATATATTCTAAGCAAAGTAAAGGAAGATACAGTGTCAGCCCCTCACAGGACTAACTGGTCCCCCACTGGGGGTACCACATTGGGGCATGGGACTAAAAGCTCACCGCCTTCAGTGTTGCAATCTCTAGACCAGGGTTCTTCAAACAGTGGTGCAAGCCAAGGACCAAGTCTAACAGAGAGACGAGCAGAAACAGAGACTAAAAATGGCATCATTTCAAAAACACCCCCACCAACAGTACATCGTGCACGTAAAACTATGTCAAGGCCGGCCTCAAACCAGACACTAAAG
Seq C2 exon
CTTTTGAACAGGGAAAATAAAGAGCCAGTCGTGGTAAAAGATGACAGTGCAGGCAAACCAGAGGCAGTGCAGCCTCAGCCATCTCTAATCCAGAATCAGCTACCTCAAAGCCAAACTGACGCCACATCTGTACCGAACACCACACCTGCCAAGCCACAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026634-'15-4,'15-2,16-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGTTTGGCCAATGGGAA
R:
TATTTGTGGCTTGGCAGGTGT
Band lengths:
248-736
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]