BtaEX0012732 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009272 | ELMSAN1
Description
ELM2 and Myb/SANT-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19853]
Coordinates
chr10:85518637-85521915:-
Coord C1 exon
chr10:85521766-85521915
Coord A exon
chr10:85520346-85520558
Coord C2 exon
chr10:85518637-85518833
Length
213 bp
Sequences
Splice sites
3' ss Seq
CCTGTTCTCGTCCCCCATAGACT
3' ss Score
10.94
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
ATCCAGACCAAGACCGTGGCCCAGTGCGTGGAGTTCTACTACACCTACAAGAAGCAGGTGAAGATCGGCCGCAATGGGACGCTAACCTTTGGGGATGTGGATACGAGTGATGAAAAGTCGGCCCAGGAAGAGGTTGAAGTGGATATTAAG
Seq A exon
ACTTCCCAGAAGTTCCCAAGGGTGCCTCCTCCCAGAAGAGAGTCCCCAAATGAAGAGAGGCTAGAGCCCAAGAAGGAAGAAAAAGAGACCAGAAAGGAGGGGGAGGAGGAGATGCCAGAGACCCAGGACAAGGGGGAGCAGGAAGAGGGGCGAGAGCGAAGCCGGCGGGCAGCGGCTGTCAAAGCCACACAGACACTACAGGCCAATGAGTCG
Seq C2 exon
GCCAATGACATCCTCATCCTCCGAAGCCACGAGTCCAACGCCCCTGGATCTGCGGGTGGCCAGGCCTCAGAGAAGCCAAGGGAGGGGCCAGGAAAGTCACGAAGGGCACTACCTTTTTCAGAGAAGAAGAAAAAAACAGAGACTTTTAATAAGACCCAGAATCAGGAGAACACTTTCCCTTGTAAAAAATGCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009272-'19-11,'19-10,20-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.480 A=1.000 C2=0.985
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PD(34.8=32.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGCGTGGAGTTCTACTACA
R:
AGTGTTCTCCTGATTCTGGGTCT
Band lengths:
303-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development