GgaEX0013629 @ galGal4
Exon Skipping
Gene
ENSGALG00000009282 | ELMSAN1
Description
ELM2 and Myb/SANT-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19853]
Coordinates
chr5:25432017-25433016:+
Coord C1 exon
chr5:25432017-25432166
Coord A exon
chr5:25432350-25432523
Coord C2 exon
chr5:25432817-25433016
Length
174 bp
Sequences
Splice sites
3' ss Seq
TCCTTTATCTTCTGGTGAAGAGT
3' ss Score
4.2
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
ATAAAAACCAAGACAGTGGCTCAGTGTGTGGAATTCTACTACACATATAAGAAACAAGTGAAAATTGGTCGGAATGGGACCTTAATTTTTGGAGACATAGATGTTGCTAATGAAAAGTCTGTGAGAGATGAAGCTGAAGTTGACATCAAG
Seq A exon
AGTTCCCATAGGTTTGCACGTGTGCTTCCTCTCAGAAGGGACTTTTTCAGTGAAGAACAGGGGCACTTGGAAGAGGAAGAAGAGGAGGCAGAAGAGGCAGAGGAAGGGTTGGATAACAGAAAGAAGAGCACACTCCTTTTCAAAGATGAACAGACACTACAAGATGATTTAATA
Seq C2 exon
GCCAGTGATGCCAATATAAGGAGTCGAGAGGCAACTGTTACCGGCAGAATTGGAAGAAGGCCGAGGGAGACGACCATGAAGCCTCGAAAGCTTATTCCTGCTCCAGTGCAGAGGAGGCGGCGAAAACAGAAGATGAAATCAGATGTTACCAGTAAAATCCAGAACACAGAAAACACATTTCCATGTAAAAAGTGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009282_MULTIEX2-1/6=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.276 C2=0.776
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PD(34.8=32.0)
A:
NO
C2:
PF138241=zf-Mss51=PU(40.0=32.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGACAGTGGCTCAGTGTG
R:
TGCACTGGAGCAGGAATAAGC
Band lengths:
253-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]