RnoEX0031751 @ rn6
Exon Skipping
Gene
ENSRNOG00000010653 | Elmsan1
Description
ELM2 and Myb/SANT domain containing 1 [Source:RGD Symbol;Acc:1306119]
Coordinates
chr6:107637447-107640524:-
Coord C1 exon
chr6:107640375-107640524
Coord A exon
chr6:107639050-107639262
Coord C2 exon
chr6:107637447-107637643
Length
213 bp
Sequences
Splice sites
3' ss Seq
GCTCATTCTTGTCCCCATAGACT
3' ss Score
9.31
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
ATCCAGACCAAGACTGTGGCTCAGTGCGTGGAGTTCTACTACACCTACAAGAAACAGGTGAAAATTGGCCGCAACGGGACACTCACCTTTGGTGACCTGGATACCGGTGCTGAGAAGTCCGGCCAAGAGGAAGTCGAGGTGGACGTTAAG
Seq A exon
ACTTCTCAGAAGTTCCCAAGGGTGCTTCCTCCCAGAAGAGAGTCCCCAAGTGAAGAGAGGCTGGAACCCAAGAGGGAAATGAAAGAACCCAAGAAGGAGGGGGAGGAGGAGGTACCAGACACCCAGGAAAAGGGAGAGCAGGAGGAGGGGCGAGAGCGCAGCCGTCGGGCCGCGGCTGTCAAAGCTACACAGACACTACAGCCCACTGAGGCG
Seq C2 exon
GCCAATGATGTCCTCATTCTCCGGAGCCACGAACCCAATGCCCCGGGGTCTGCCAGTGTTCAGACCTCAGAGAAGCCAAGGGAAGGGCCGGGGAAGTCACGAAGGGCTCTGCCTTTCACAGAGAAGAAGAAAAAACCGGAGGCATTTAATAAAACCCAAAACCAGGAGAACACTTTCCCTTGTAAAAAGTGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010653_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=1.000 C2=0.894
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PD(34.8=32.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGTGCGTGGAGTTCTAC
R:
AGTGTTCTCCTGGTTTTGGGT
Band lengths:
306-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]