HsaEX0009490 @ hg19
Exon Skipping
Gene
ENSG00000156030 | C14orf43
Description
chromosome 14 open reading frame 43 [Source:HGNC Symbol;Acc:19853]
Coordinates
chr14:74181825-74189550:-
Coord C1 exon
chr14:74189401-74189550
Coord A exon
chr14:74188000-74188212
Coord C2 exon
chr14:74181825-74186204
Length
213 bp
Sequences
Splice sites
3' ss Seq
CTTGTTCTTGTTCCCCATAGACT
3' ss Score
10.56
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
ATCCAGACCAAGACCGTGGCCCAGTGCGTGGAGTTCTACTACACCTACAAGAAGCAGGTGAAAATCGGCCGCAATGGGACTCTAACCTTTGGGGATGTGGATACGAGCGATGAGAAGTCGGCCCAGGAAGAGGTTGAAGTGGATATTAAG
Seq A exon
ACTTCCCAAAAGTTCCCAAGGGTGCCTCTTCCCAGAAGAGAGTCCCCAAGTGAAGAGAGGCTGGAGCCCAAGAGGGAGGTGAAGGAGCCCAGGAAGGAGGGGGAGGAGGAGGTGCCAGAGATCCAAGAGAAGGAGGAGCAGGAAGAGGGGCGAGAGCGCAGCAGGCGGGCAGCGGCAGTCAAAGCCACGCAGACACTACAGGCCAATGAGTCG
Seq C2 exon
GCCAGTGACATCCTCATCCTCCGGAGCCACGAGTCCAACGCCCCTGGGTCTGCCGGTGGCCAGGCCTCGGAGAAGCCAAGGGAAGGGACAGGGAAGTCACGAAGGGCACTACCTTTTTCAGAGAAGAAGAAAAAAACAGAGACATTCAGTAAGACCCAGAATCAGGAGAACACTTTCCCCTGTAAAAAATGTGGCAGGTAAGGTGGGCAGCGCTGTCCCCGCTGGGACCCCCGCGGGCTGGTGCGCGGAGGGGGCGGGGGTGGGGTGGAGGGGAGGGGGAAGAGGTACAGGCGGTGTCCGCCTCGTTTCTGGTTGGCTCAGCGGGTTTCTAGGGCTGTGACGTCATGGGGCAGCTTTCGGAAAATGACGCGAGCTGGCCGGCCGCGGCTGTGCAGCGTGGGGGTGAAGGTGAAGGCTGGGGCTCCTCGCGCACCCGCGCTGGGGGCCCCCGGGTGGGCTAGGCCGGTTCTGAGCAACCCCCACCCGGCTGCAGGGTGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156030_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.460 A=1.000 C2=0.986
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PD(34.8=32.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCAGGTGAAAATCGGCC
R:
CCCACCTTACCTGCCACATTT
Band lengths:
308-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)