DreEX0029742 @ danRer10
Exon Skipping
Gene
ENSDARG00000053864 | elmsan1b
Description
ELM2 and Myb/SANT-like domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-131121-13]
Coordinates
chr17:37402706-37405555:+
Coord C1 exon
chr17:37402706-37402852
Coord A exon
chr17:37403043-37403165
Coord C2 exon
chr17:37405359-37405555
Length
123 bp
Sequences
Splice sites
3' ss Seq
TAATGTTTCATTTCCATCAGAGT
3' ss Score
6.31
5' ss Seq
AATGTGAGA
5' ss Score
3.37
Exon sequences
Seq C1 exon
GTGAGCTCCAAGACTGTAGCACAGTGTGTGGAGTTTTACTACACATATAAGAAGCAGGTGAAGATCGGCAGGAACGGCACGCTCGTATACGGAGAAACAGAGCCGCTGGAGACTAAACCCACAACAGAGGAGGAAGTGGACAACAAA
Seq A exon
AGTTCACAGAAACTCGAATCACGGAAAGAAGATGAGGAGAGCAGGAAGTGGGAAGGGTCATGTGACAGGAAGCAAGAAGACAGCCCCGGCAGGGTGACACAATCTCTACAGGCCACCGAAAAT
Seq C2 exon
GCTGCTGCCGTCTTGGTCTTGAGTCAGGAGAACAGCACCAGACATCCGTCCACATTGGGGGTCAGTCATCCTCCTCATCCACCTCAACCACCATCCAAATCTCGCTCCGACACTGCTGCCAGGAAAACTGGGCCCAGCAACACAGGAAAGGGACAAACCAACCAAGAGGGCGAATTCCCCTGCAAGAAGTGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053864_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.469 A=1.000 C2=0.894
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PD(34.8=32.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGAAGATCGGCAGGAAC
R:
TGTCCCTTTCCTGTGTTGCTG
Band lengths:
248-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]